Not sure if this is 100% what you need but it might be a start, I frequently have a clip that has a 3-point loop underneath other elements that animate independently from the loop.
To start, I make two scene directors: "Loop" & "Animation", make sure you set "Animation" as your default SD.
In the "Loop" SD I only put in the clip I want to 3-point loop and the Event to make it loop properly. Everything else goes in the "Animation" SD and it can include pretty much anything; pauses, other clips, animation controllers...
Then add the script to your scene in OnOnline:
dim sd as xpSceneDirector
self.GetSceneDirectorByName("Loop", sd)
sd.PlayRange(0, sd.Duration)
Just make sure that "Loop" matches whatever you call your scene director with the 3-point loop in it.
#XPression