So I found one of my problems was the audio was exporting as 44.1 and Blackstorm will only accept 48 khz. Then I got the video to work by using the Animation Codec, Millions of Colors, and Keyframes set to "every." The files are quite large.
Still no luck on the DVCPRO50 HD Codec. Even if I export it as 1920 X 1080 the Blackstorm sees it as an SD clip.
On the ISIS I created a Workspace called "Blackstorm Export" and then mounted this Workspace on the Blackstorm using the ISIS Client Manager. This seems to be working pretty well.