First and foremost I want to thank Jeremy Bourque, Technical Support Specialist at Ross and also Les in getting the media player(s) audio back into the mix.
For those that have had the same issue of trying to have audio from the media players and also from external devices such as the blackstorm or fast forward here is the breakdown on how to achieve hearing the audio.
Make M1 (media player 1) the AncScr for MV1 (multi-viewer 1) AND M2 (media player 2) the AncScr for MV2 (multi-viewer 2). Make your custom control target the MV1 (media player 1 audio) or MV2 (media player 2 audio) in order to send your de-embedder the desired media player audio signal.
I use Output 5 which is my (Aux 5) to send the audio signals to the de-embedder, here is an example of a typical custom control I use.
Aux 5 (sends audio out to de-embedder / aja) "“ MV1, MV2, FF1, FF2, Blackstorm 1/2
ME2 Key4 "“ State OFF
ME2 Key4 - M1, M2, FF1, FF2, Blackstorm 1/2 (selects key input I change this a lot)
Cue (GPI cue FF, Load TGA if Media Player, Cue file if Blackstorm)
Pause 3 frames "“ (time delay for all devices to think)
Play (cued item)
ME2 Key4 "“ State ON
Pause (amount before under cut)
Cut
Pause (amount of frames the effect takes to finish the move)
ME2 Key4 "“ State OFF
Aux 5 (sends audio out to de-embedder / aja) "“ BLACK (ie... mute)
ME2 Key4 (select source "“ telestrator)
ME2 Key4 "“ State ON
#Carbonite